Setting up images and SEDs#
There are two main kinds of images/SEDs that can be produced for each model: images/SEDs computed by binning the photons as they escape from the density grid, and images/SEDs computed by peeling off photon packets at each interaction into well defined directions. The latter provide more accurate SEDs and much better signal-to-noise, and are likely to be more commonly used than the former.
The code currently allows at most one set of binned images, and any number of sets of peeled images. A set is defined by a wavelength range, image resolution and extent, and any number of viewing angles.
Creating a set of images#
To add a set of binned images/SEDs to the model, use:
image = m.add_binned_images()
and to create a set of peeled images/SEDs to the model, use:
image = m.add_peeled_images()
Only one set of binned images can be added, but any number of sets of peeled image can be added. In general, peeled images are recommended because binned images suffer from low signal-to-noise, and angle averaging of images.
The wavelength range (in microns) for the images/SEDs should be specified using:
image.set_wavelength_range(n_wav, wav_min, wav_max)
The image size in pixels and the extent of the images should be specified using:
image.set_image_size(n_x, n_y)
image.set_image_limits(xmin, xmax, ymin, ymax)
where the image limits should be given in cm. The apertures for the SEDs can be specified using:
image.set_aperture_radii(n_ap, ap_min, ap_max)
where the radii should be given in cm. If this is not specified, the default is to have one aperture with infinite size, i.e. measuring all the flux.
For binned images, the number of bins in the theta and phi direction should be specified using:
image.set_viewing_bins(10, 10)
whereas for peeled images, the viewing angles should be specified as lists or arrays of theta and phi values, in degrees. For example, the following produces images from pole-on to edge-on at constant phi using 20 viewing angles:
# Set number of viewing angles
n_view = 20
# Generate the viewing angles
theta = np.linspace(0., 90., n_view)
phi = np.repeat(45., n_view)
# Set the viewing angles
image.set_viewing_angles(theta, phi)
Note
For peeled images, the number of viewing angles directly impacts the performance of the code - once the specific energy/temperature has been computed, the code will then run approximately in a time proportional to the number of viewing angles.
Uncertainties#
Uncertainties can be computed for SEDs/images (doubling the memory/disk space required):
image.set_uncertainties(True)
Stokes components#
By default, to save memory and disk space, the Stokes components other than I
for the images are not saved. To enable the storage of the Stokes components
other than I, make use of the set_stokes
method:
sed.set_stokes(True)
or:
image.set_stokes(True)
If you do not do this, then you will not be able to make use of the stokes=
option in get_sed()
and
get_image()
.
Note
In Hyperion 0.9.3 and earlier versions, this option did not exist and Stokes components were all saved by default. Note that the default behavior is now changed. However, files produced in Hyperion 0.9.3 and earlier will behave as if the option was set to True for backward-compatibility.
File output#
Finally, to save space, images can be written out as 32-bit floats instead of 64-bit floats. To write them out as 32-bit floats, use:
image.set_output_bytes(4)
and to write them out as 64-bit floats, use:
image.set_output_bytes(8)
Tracking photon origin#
SEDs/images can also be split into emitted/thermal or scattered components from sources or dust (4 combinations). To activate this, use:
image.set_track_origin('basic')
It is also possible to split the SED into individual sources and dust types:
image.set_track_origin('detailed')
For example, if five sources and two dust types are present, there will be 14 components in total: five for photons emitted from sources, two for photons emitted from dust, five for photons emitted from sources and subsequently scattered, and two for photons emitted from dust and subsequently scattered.
Finally, it is also possible to split the photons as a function of how many times they scattered:
image.set_track_origin('scatterings', n_scat=5)
where n_scat
gives the maxmimum number of scatterings to record.
See Post-processing models for information on how to extract this information from the output files.
Note
If you are using the AnalyticalYSOModel
class and are interested in separating the disk, envelope, and other
components, but are using the same dust file for the different
components, these will by default be merged prior to the radiative
transfer calculation, so you will need to set
merge_if_possible=False
when
calling write()
to prevent this
(see write()
for more
information).
Disabling SEDs or Images#
When adding a set of binned or peeled images, it is possible to disable the SED or image part:
image = m.add_binned_images() # Images and SEDs
image = m.add_binned_images(image=False) # SEDs
image = m.add_binned_images(sed=False) # Images
image = m.add_peeled_images() # Images and SEDs
image = m.add_peeled_images(image=False) # SEDs
image = m.add_peeled_images(sed=False) # Images
Advanced#
A few more advanced parameters are available for peeled images, and these are described in Advanced settings for peeled images.
Example#
The following example creates two sets of peeled SEDs/images. The first is used to produce an SED with 250 wavelengths from 0.01 to 5000. microns with uncertainties, and the second is used to produce images at 5 wavelengths between 10 and 100 microns, with image size 100x100 and extending +/-1pc in each direction:
image1 = m.add_peeled_images(image=False)
image1.set_wavelength_range(250, 0.01, 5000.)
image1.set_uncertainties(True)
image2 = m.add_peeled_images(sed=False)
image2.set_wavelength_range(5, 10., 100.)
image2.set_image_size(100, 100)
image2.set_image_limits(-pc, +pc, -pc, +pc)